SNVMix | Tool name | SNVMix |
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| URL | http://compbio.bccrc.ca/software/snvmix/ |
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| Important features | 1. Detects single nucleotide variants from next generation sequencing data.
2. Post alignment tool.
3. SNVMix will output the probability that each position is one of three genotypes (homozygous for the reference allele, heterozygous, homozygous for a non-reference allele). |
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| Citations | Goya R, Sun MG, Morin RD, Leung G, Ha G, Wiegand KC, Senz J, Crisan A, Marra MA, Hirst M, Huntsman D, Murphy KP, Aparicio S, Shah SP. SNVMix: predicting
single nucleotide variants from next-generation sequencing of tumors.
Bioinformatics. 2010 Mar 15;26(6):730-6. Epub 2010 Feb 3. PubMed PMID: 20130035;
PubMed Central PMCID: PMC2832826. |
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| Year of publication | 2010 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | SNP discovery |
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| Category | Free, Downloadable |
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| License | |
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| Status | |
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| Input file format | Pileup (either Maq or SAMTools format) |
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| Output file format | |
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| Operating system |
Linux and Mac OS X |
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| Operating language | C |
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| Platform | Illumina/Solexa |
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| Maintained by | BCCRC Computational Biology
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| Downloadable file format | |
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| Submission file format | |
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